Journal papers:




Engineering with Computers



1. Mesh Deformation-based Multi-tissue Mesh Generation for Brain Images. Yixun Liu, Panagiotis Foteinos, Andrey Chernikov, and Nikos Chrisochoides. Pages 1-14. 2012. DOI. BibTeX.
   
   

   SIAM Journal on Scientific Computing

   
   
2. Generalized Insertion Region Guides for Delaunay Mesh Refinement. Andrey Chernikov and Nikos Chrisochoides. Vol. 34(3), pages A1333-A1350. 2012. DOI. BibTeX.
   
   
3. Multitissue Tetrahedral Image-to-Mesh Conversion with Guaranteed Quality and Fidelity. Andrey Chernikov and Nikos Chrisochoides. Vol. 33(6), pages 3491-3508. 2011. DOI. BibTeX.
   
   
4. Fully Generalized 2D Constrained Delaunay Mesh Refinement. Panagiotis Foteinos, Andrey Chernikov, and Nikos Chrisochoides. Vol. 32(5), pages 2659-2686. 2010. DOI. BibTeX.
   
   
5. Generalized Two-Dimensional Delaunay Mesh Refinement. Andrey Chernikov and Nikos Chrisochoides. Vol. 31(5), pages 3387-3403. 2009. DOI. BibTeX.
   
   
6. Parallel Guaranteed Quality Delaunay Uniform Mesh Refinement. Andrey Chernikov and Nikos Chrisochoides. Vol. 28(5), pages 1907-1926. November 2006. DOI. BibTeX.
   
   

   ACM Journal on Experimental Algorithmics

   
   
7. Effective Out-of-Core Parallel Delaunay Mesh Refinement Using Off-the-Shelf Software. Andriy Kot, Andrey Chernikov, and Nikos Chrisochoides. Vol. 16(3), pages 1.5:1.1-1.5:1.22. August 2011. DOI. BibTeX.
   
   

   Finite Elements in Analysis and Design

   
   
8. A Template for Developing Next Generation Parallel Delaunay Refinement Methods. Andrey Chernikov and Nikos Chrisochoides. Vol. 46, pages 96-113. 2010. DOI. BibTeX.
   
   

   Journal on Parallel and Distributed Computing

   
   
9. Algorithm, Software, and Hardware Optimizations for Delaunay Mesh Generation on Simultaneous Multithreaded Architectures. Christos Antonopoulos, Filip Blagojevic, Andrey Chernikov, Nikos Chrisochoides, and Dimitris Nikolopoulos. Vol. 69(7), pages 601-612. 2009. DOI. BibTeX.
   
   
10. A Multigrain Delaunay Mesh Generation Method for Multicore SMT-based Architectures. Christos Antonopoulos, Filip Blagojevic, Andrey Chernikov, Nikos Chrisochoides, and Dimitris Nikolopoulos. Vol. 69(7), pages 589-600. 2009. DOI. BibTeX.
    
    

    ACM Transactions on Mathematical Software

    
    
11. Algorithm 872: Parallel 2D Constrained Delaunay Mesh Generation. Andrey Chernikov and Nikos Chrisochoides. Vol. 34(1), pages 6-25. January 2008. DOI. BibTeX.
    
    

    Mathematics and Computers in Simulation

    
    
12. Parallel Unstructured Mesh Generation by an Advancing Front Method. Yasushi Ito, Alan Shih, Anil Erukala, Bharat Soni, Andrey Chernikov, Nikos Chrisochoides, and Kazuhiro Nakahashi. Vol. 75(5-6), pages 200-209. September 2007. DOI. BibTeX.
    
    

    IEEE Transactions on Parallel and Distributed Systems

    
    
13. A Load Balancing Framework for Adaptive and Asynchronous Applications. Kevin Barker, Andrey Chernikov, Nikos Chrisochoides, and Keshav Pingali. Vol. 15(2), pages 183-192. February 2004. DOI. BibTeX.
    
    

    Computer Instruments in Education

    
    
14. Virtual school: Program-methodical Foundations of the Basic Computer Science Course. Leila Shautsukova and Andrey Chernikov. Vol. 6, pages 62-66. 2000. PDF. BibTeX.
    
    

Book chapters:




Springer



1. Tetrahedral Image-To-Mesh Conversion Approaches For Surgery Simulation and Navigation. Andrey Chernikov, Panagiotis Foteinos, Yixun Liu, Michel Audette, Andinet Enquobahrie, and Nikos Chrisochoides. Chapter in Image-Based Geometric Modeling and Mesh Generation, Lecture Notes in Computational Vision and Biomechanics (Yongjie (Jessica) Zhang, ed.). Pages 69-84. 2013. DOI. BibTeX.
   
   
2. An Evaluation of Tetrahedral Mesh Generation for Non-Rigid Registration of Brain MRI. Panagiotis Foteinos, Yixun Liu, Andrey Chernikov, and Nikos Chrisochoides. Chapter in Computational Biomechanics for Medicine, Soft Tissues and the Musculoskeletal System (Adam Wittek, Poul M. F. Nielsen, and Karol Miller, eds.). Pages 131-142. 2011. DOI. BibTeX.
   
   

   John Wiley and Sons, Inc

   
   
3. A Review of Mesh Generation for Medical Simulators. Michel Audette, Andrey Chernikov, and Nikos Chrisochoides. Chapter in Handbook of Real-World Applications in Modeling and Simulations (John Sokolowski and Catherine Banks, eds.). Pages 261-297. 2012. DOI. BibTeX.
   
   

Conference papers:




Computational Structural Bioinformatics Workshop (in conjunction with The IEEE International Conference on Bioinformatics and Biomedicine)



1. CryoEM Skeleton Length Estimation using a Decimated Curve. Andrew McKnight, Kamal Al Nasr, Dong Si, Andrey Chernikov, Nikos Chrisochoides, and Jing He. Pages 109-113. Philadelphia, PA, October 2012. BibTeX.
   
   

   ACM Conference on Bioinformatics, Computational Biology and Biomedicine

   
   
2. Tetrahedral Image-To-Mesh Conversion For Biomedical Applications. Andrey Chernikov and Nikos Chrisochoides. Pages 125-134. Chicago, IL, August 2011. DOI. BibTeX.
   
   

   IEEE International Parallel and Distributed Processing Symposium

   
   
3. Out-of-core Run-Time System for Effective Parallel Mesh Generation. Andriy Kot, Andrey Chernikov, and Nikos Chrisochoides. Pages 164-175. Anchorage, AK, May 2011. DOI. BibTeX.
   
   
4. Effective Out-of-Core Parallel Delaunay Mesh Refinement using Off-the-Shelf Software. Andriy Kot, Andrey Chernikov, and Nikos Chrisochoides. Rhodes Island, Greece, April 2006. DOI. BibTeX.
   
   

   International Meshing Roundtable

   
   
5. Multi-tissue Mesh Generation For Brain Images. Yixun Liu, Panagiotis Foteinos, Andrey Chernikov, and Nikos Chrisochoides. Pages 367-384. Chattanooga, TN, October 2010. DOI. BibTeX.
   
   
6. Towards Exascale Parallel Delaunay Mesh Generation. Nikos Chrisochoides, Andrey Chernikov, Andriy Fedorov, Andriy Kot, Leonidas Linardakis, and Panagiotis Foteinos. Pages 319-336. Salt Lake City, UT, October 2009. DOI. BibTeX.
   
   
7. Three-Dimensional Semi-Generalized Point Placement Method for Delaunay Mesh Refinement. Andrey Chernikov and Nikos Chrisochoides. Pages 25-44. Seattle, WA, October 2007. DOI. BibTeX.
   
   
8. Generalized Delaunay Mesh Refinement: From Scalar to Parallel. Andrey Chernikov and Nikos Chrisochoides. Pages 563-580. Birmingham, AL, September 2006. DOI. BibTeX.
   
   
9. Parallel 2D Graded Guaranteed Quality Delaunay Mesh Refinement. Andrey Chernikov and Nikos Chrisochoides. Pages 505-517. San Diego, CA, September 2005. DOI. BibTeX.
   
   

   International Symposium on Voronoi Diagrams in Science and Engineering

   
   
10. Guaranteed Quality Tetrahedral Delaunay Meshing for Medical Images. Panagiotis Foteinos, Andrey Chernikov, and Nikos Chrisochoides. Pages 215-223. Quebec City, Canada, June 2010. DOI. BibTeX.
    
    

    ACM International Conference on Supercomputing

    
    
11. Three-Dimensional Delaunay Refinement for Multi-Core Processors. Andrey Chernikov and Nikos Chrisochoides. Pages 214-224. Island of Kos, Greece, June 2008. DOI. BibTeX.
    
    
12. Multigrain Parallel Delaunay Mesh Generation: Challenges and Opportunities for Multithreaded Architectures. Christos Antonopoulos, Xiaoning Ding, Andrey Chernikov, Filip Blagojevic, Dimitris Nikolopoulos, and Nikos Chrisochoides. Pages 367-376. Cambridge, MA, June 2005. DOI. BibTeX.
    
    
13. Practical and Efficient Point Insertion Scheduling Method for Parallel Guaranteed Quality Delaunay Refinement. Andrey Chernikov and Nikos Chrisochoides. Pages 48-57. Saint-Malo, France, June 2004. DOI. BibTeX.
    
    

    International Conference on Numerical Grid Generation in Computational Field Simulations

    
    
14. Experience with Memory Allocators for Parallel Mesh Generation on Multicore Architectures. Andrey Chernikov, Christos Antonopoulos, Nikos Chrisochoides, Scott Schneider, and Dimitris Nikolopoulos. Forth, Crete, Greece, September 2007. Published on CD-ROM. PDF. BibTeX.
    
    
15. Generation of Unstructured Meshes in Parallel Using an Advancing Front Method. Yasushi Ito, Alan Shih, Anil Erukala, Bharat Soni, Andrey Chernikov, Nikos Chrisochoides, and Kazuhiro Nakahashi. San Jose, CA, June 2005. PDF. BibTeX.
    
    
16. Parallel Programming Environment for Mesh Generation. Andrey Chernikov, Nikos Chrisochoides, and Kevin Barker. Pages 805-814. Honolulu, HI, June 2002. PDF. BibTeX.
    
    

    IEEE International Workshop on Intelligent Data Acquisition and Advanced Computing Systems: Technology and Applications

    
    
17. Parallel Out-of-Core Constrained Delaunay Mesh Generation. Andriy Kot, Andrey Chernikov, and Nikos Chrisochoides. Pages 183-190. Sofia, Bulgaria, September 2005. DOI. BibTeX.
    
    

    IMACS World Congress Scientific Computation, Applied Mathematics and Simulation

    
    
18. Out-of-Core Parallel Delaunay Mesh Generation. Andriy Kot, Andrey Chernikov, and Nikos Chrisochoides. Paris, France, July 2005. Paper T1-R-00-0710. PDF. BibTeX.
    
    

Book:




Chapman and Hall/CRC



1. Parallel Mesh Generation: Theory and Practice. Nikos Chrisochoides and Andrey Chernikov. In progress. ISBN: 978-1-4200-7395-9. BibTeX.