in progress


  1. Parallel Mesh Generation: Theory and Practice. Nikos Chrisochoides and Andrey Chernikov. Chapman and Hall/CRC. In progress. ISBN: 978-1-4200-7395-9. BibTeX.

    2013


  2. Tetrahedral Image-To-Mesh Conversion Approaches For Surgery Simulation and Navigation. Andrey Chernikov, Panagiotis Foteinos, Yixun Liu, Michel Audette, Andinet Enquobahrie, and Nikos Chrisochoides. Chapter in Image-Based Geometric Modeling and Mesh Generation, Lecture Notes in Computational Vision and Biomechanics (Yongjie (Jessica) Zhang, ed.). Springer, pages 69-84. 2013. DOI. BibTeX.

    2012


  3. CryoEM Skeleton Length Estimation using a Decimated Curve. Andrew McKnight, Kamal Al Nasr, Dong Si, Andrey Chernikov, Nikos Chrisochoides, and Jing He. Computational Structural Bioinformatics Workshop (in conjunction with The IEEE International Conference on Bioinformatics and Biomedicine), pages 109-113. Philadelphia, PA, October 2012. BibTeX.

  4. A Review of Mesh Generation for Medical Simulators. Michel Audette, Andrey Chernikov, and Nikos Chrisochoides. Chapter in Handbook of Real-World Applications in Modeling and Simulations (John Sokolowski and Catherine Banks, eds.). John Wiley and Sons, Inc, pages 261-297. 2012. DOI. BibTeX.

  5. Generalized Insertion Region Guides for Delaunay Mesh Refinement. Andrey Chernikov and Nikos Chrisochoides. SIAM Journal on Scientific Computing, vol. 34(3), pages A1333-A1350. 2012. DOI. BibTeX.

  6. Mesh Deformation-based Multi-tissue Mesh Generation for Brain Images. Yixun Liu, Panagiotis Foteinos, Andrey Chernikov, and Nikos Chrisochoides. Engineering with Computers, pages 1-14. 2012. DOI. BibTeX.

    2011


  7. An Evaluation of Tetrahedral Mesh Generation for Non-Rigid Registration of Brain MRI. Panagiotis Foteinos, Yixun Liu, Andrey Chernikov, and Nikos Chrisochoides. Chapter in Computational Biomechanics for Medicine, Soft Tissues and the Musculoskeletal System (Adam Wittek, Poul M. F. Nielsen, and Karol Miller, eds.). Springer, pages 131-142. 2011. DOI. BibTeX.

  8. Multitissue Tetrahedral Image-to-Mesh Conversion with Guaranteed Quality and Fidelity. Andrey Chernikov and Nikos Chrisochoides. SIAM Journal on Scientific Computing, vol. 33(6), pages 3491-3508. 2011. DOI. BibTeX.

  9. Tetrahedral Image-To-Mesh Conversion For Biomedical Applications. Andrey Chernikov and Nikos Chrisochoides. ACM Conference on Bioinformatics, Computational Biology and Biomedicine, pages 125-134. Chicago, IL, August 2011. DOI. BibTeX.

  10. Out-of-core Run-Time System for Effective Parallel Mesh Generation. Andriy Kot, Andrey Chernikov, and Nikos Chrisochoides. 25th IEEE International Parallel and Distributed Processing Symposium, pages 164-175. Anchorage, AK, May 2011. DOI. BibTeX.

  11. Effective Out-of-Core Parallel Delaunay Mesh Refinement Using Off-the-Shelf Software. Andriy Kot, Andrey Chernikov, and Nikos Chrisochoides. ACM Journal on Experimental Algorithmics, vol. 16(3), pages 1.5:1.1-1.5:1.22. August 2011. DOI. BibTeX.

    2010


  12. Multi-tissue Mesh Generation For Brain Images. Yixun Liu, Panagiotis Foteinos, Andrey Chernikov, and Nikos Chrisochoides. 19th International Meshing Roundtable, pages 367-384. Chattanooga, TN, October 2010. DOI. BibTeX.

  13. Fully Generalized 2D Constrained Delaunay Mesh Refinement. Panagiotis Foteinos, Andrey Chernikov, and Nikos Chrisochoides. SIAM Journal on Scientific Computing, vol. 32(5), pages 2659-2686. 2010. DOI. BibTeX.

  14. Guaranteed Quality Tetrahedral Delaunay Meshing for Medical Images. Panagiotis Foteinos, Andrey Chernikov, and Nikos Chrisochoides. 7th International Symposium on Voronoi Diagrams in Science and Engineering, pages 215-223. Quebec City, Canada, June 2010. DOI. BibTeX.

  15. A Template for Developing Next Generation Parallel Delaunay Refinement Methods. Andrey Chernikov and Nikos Chrisochoides. Finite Elements in Analysis and Design, vol. 46, pages 96-113. 2010. DOI. BibTeX.

    2009


  16. Towards Exascale Parallel Delaunay Mesh Generation. Nikos Chrisochoides, Andrey Chernikov, Andriy Fedorov, Andriy Kot, Leonidas Linardakis, and Panagiotis Foteinos. 18th International Meshing Roundtable, pages 319-336. Salt Lake City, UT, October 2009. DOI. BibTeX.

  17. Generalized Two-Dimensional Delaunay Mesh Refinement. Andrey Chernikov and Nikos Chrisochoides. SIAM Journal on Scientific Computing, vol. 31(5), pages 3387-3403. 2009. DOI. BibTeX.

  18. A Multigrain Delaunay Mesh Generation Method for Multicore SMT-based Architectures. Christos Antonopoulos, Filip Blagojevic, Andrey Chernikov, Nikos Chrisochoides, and Dimitris Nikolopoulos. Journal on Parallel and Distributed Computing, vol. 69(7), pages 589-600. 2009. DOI. BibTeX.

  19. Algorithm, Software, and Hardware Optimizations for Delaunay Mesh Generation on Simultaneous Multithreaded Architectures. Christos Antonopoulos, Filip Blagojevic, Andrey Chernikov, Nikos Chrisochoides, and Dimitris Nikolopoulos. Journal on Parallel and Distributed Computing, vol. 69(7), pages 601-612. 2009. DOI. BibTeX.

    2008


  20. Three-Dimensional Delaunay Refinement for Multi-Core Processors. Andrey Chernikov and Nikos Chrisochoides. 22nd ACM International Conference on Supercomputing, pages 214-224. Island of Kos, Greece, June 2008. DOI. BibTeX.

  21. Algorithm 872: Parallel 2D Constrained Delaunay Mesh Generation. Andrey Chernikov and Nikos Chrisochoides. ACM Transactions on Mathematical Software, vol. 34(1), pages 6-25. January 2008. DOI. BibTeX.

    2007


  22. Experience with Memory Allocators for Parallel Mesh Generation on Multicore Architectures. Andrey Chernikov, Christos Antonopoulos, Nikos Chrisochoides, Scott Schneider, and Dimitris Nikolopoulos. 10th International Conference on Numerical Grid Generation in Computational Field Simulations. Forth, Crete, Greece, September 2007. Published on CD-ROM. PDF. BibTeX.

  23. Three-Dimensional Semi-Generalized Point Placement Method for Delaunay Mesh Refinement. Andrey Chernikov and Nikos Chrisochoides. 16th International Meshing Roundtable, pages 25-44. Seattle, WA, October 2007. DOI. BibTeX.

  24. Parallel Unstructured Mesh Generation by an Advancing Front Method. Yasushi Ito, Alan Shih, Anil Erukala, Bharat Soni, Andrey Chernikov, Nikos Chrisochoides, and Kazuhiro Nakahashi. Mathematics and Computers in Simulation, vol. 75(5-6), pages 200-209. September 2007. DOI. BibTeX.

    2006


  25. Generalized Delaunay Mesh Refinement: From Scalar to Parallel. Andrey Chernikov and Nikos Chrisochoides. 15th International Meshing Roundtable, pages 563-580. Birmingham, AL, September 2006. DOI. BibTeX.

  26. Effective Out-of-Core Parallel Delaunay Mesh Refinement using Off-the-Shelf Software. Andriy Kot, Andrey Chernikov, and Nikos Chrisochoides. 20th IEEE International Parallel and Distributed Processing Symposium. Rhodes Island, Greece, April 2006. DOI. BibTeX.

  27. Parallel Guaranteed Quality Delaunay Uniform Mesh Refinement. Andrey Chernikov and Nikos Chrisochoides. SIAM Journal on Scientific Computing, vol. 28(5), pages 1907-1926. November 2006. DOI. BibTeX.

    2005


  28. Generation of Unstructured Meshes in Parallel Using an Advancing Front Method. Yasushi Ito, Alan Shih, Anil Erukala, Bharat Soni, Andrey Chernikov, Nikos Chrisochoides, and Kazuhiro Nakahashi. 9th International Conference on Numerical Grid Generation in Computational Field Simulations. San Jose, CA, June 2005. PDF. BibTeX.

  29. Parallel 2D Graded Guaranteed Quality Delaunay Mesh Refinement. Andrey Chernikov and Nikos Chrisochoides. 14th International Meshing Roundtable, pages 505-517. San Diego, CA, September 2005. DOI. BibTeX.

  30. Parallel Out-of-Core Constrained Delaunay Mesh Generation. Andriy Kot, Andrey Chernikov, and Nikos Chrisochoides. 3rd IEEE International Workshop on Intelligent Data Acquisition and Advanced Computing Systems: Technology and Applications, pages 183-190. Sofia, Bulgaria, September 2005. DOI. BibTeX.

  31. Multigrain Parallel Delaunay Mesh Generation: Challenges and Opportunities for Multithreaded Architectures. Christos Antonopoulos, Xiaoning Ding, Andrey Chernikov, Filip Blagojevic, Dimitris Nikolopoulos, and Nikos Chrisochoides. 19th ACM International Conference on Supercomputing, pages 367-376. Cambridge, MA, June 2005. DOI. BibTeX.

  32. Out-of-Core Parallel Delaunay Mesh Generation. Andriy Kot, Andrey Chernikov, and Nikos Chrisochoides. 17th IMACS World Congress Scientific Computation, Applied Mathematics and Simulation. Paris, France, July 2005. Paper T1-R-00-0710. PDF. BibTeX.

    2004


  33. A Load Balancing Framework for Adaptive and Asynchronous Applications. Kevin Barker, Andrey Chernikov, Nikos Chrisochoides, and Keshav Pingali. IEEE Transactions on Parallel and Distributed Systems, vol. 15(2), pages 183-192. February 2004. DOI. BibTeX.

  34. Practical and Efficient Point Insertion Scheduling Method for Parallel Guaranteed Quality Delaunay Refinement. Andrey Chernikov and Nikos Chrisochoides. 18th ACM International Conference on Supercomputing, pages 48-57. Saint-Malo, France, June 2004. DOI. BibTeX.

    2002


  35. Parallel Programming Environment for Mesh Generation. Andrey Chernikov, Nikos Chrisochoides, and Kevin Barker. 8th International Conference on Numerical Grid Generation in Computational Field Simulations, pages 805-814. Honolulu, HI, June 2002. PDF. BibTeX.

    2000


  36. Virtual school: Program-methodical Foundations of the Basic Computer Science Course. Leila Shautsukova and Andrey Chernikov. Computer Instruments in Education, vol. 6, pages 62-66. 2000. PDF. BibTeX.