1. Origami-inspired declarative surface folding model. Nathan Dearce and Andrey Chernikov. Modeling, Simulation, and Visualization Student Capstone Conference. Suffolk, VA, April 2023. 2-page abstract. BibTeX.
   
   
2. Efficient tetrahedralization of multi-material images with quality, fidelity, and topological guarantees. Jing Xu, Daming Feng, and Andrey Chernikov. Finite Elements in Analysis and Design, vol. 203. 2022. 103723, 14 pages. DOI. BibTeX.
   
   
3. Certified functions for mesh generation. Andrey Chernikov. 28th International Meshing Roundtable, pages 147-157. Buffalo, NY, October 2019. DOI. BibTeX.
   
   
4. Hybrid RANS/LES simulation of vortex breakdown over a delta wing. Beckett Yx Zhou, Boris Diskin, Nicolas Gauger, Juliette Pardue, Andrey Chernikov, Christos Tsolakis, Fotis Drakopoulos, and Nikos Chrisochoides. AIAA Aviation and Aeronautics Forum and Exposition. Dallas, TX, June 2019. (AIAA 2019-3524). DOI. BibTeX.
   
   
5. Algorithm 995: An efficient parallel anisotropic Delaunay mesh generator for two-dimensional finite element analysis. Juliette Pardue and Andrey Chernikov. ACM Transactions on Mathematical Software, vol. 45(3), pages 33:1-33:30. July 2019. DOI. BibTeX.
   
   
6. Construction of discrete descriptions of biological shapes through curvilinear image meshing. Jing Xu and Andrey Chernikov. International Journal of Bioinformatics Research and Applications, vol. 15(3), pages 272-295. 2019. DOI. BibTeX.
   
   
7. Three-dimensional prism-dominant mesh generation for viscous flows around surface slope discontinuities. Juliette Pardue and Andrey Chernikov. AIAA Aviation and Aeronautics Forum and Exposition. Atlanta, GA, June 2018. (AIAA 2018-3722). DOI. BibTeX.
   
   
8. Parallel data refinement layer of a telescopic approach for extreme-scale parallel mesh generation for CFD applications. Nikos Chrisochoides, Andrey Chernikov, Thomas Kennedy, Christos Tsolakis, and Kevin Garner. AIAA Aviation and Aeronautics Forum and Exposition. Atlanta, GA, June 2018. (AIAA 2018-2887). DOI. BibTeX.
   
   
9. A hybrid parallel Delaunay image-to-mesh conversion algorithm scalable on distributed-memory clusters. Daming Feng, Andrey Chernikov, and Nikos Chrisochoides. Computer-Aided Design, vol. 103, pages 34-46. 2018. DOI. BibTeX.
   
   
10. Parallel three-dimensional constrained Delaunay meshing. Andrey Chernikov, Christos Tsolakis, and Nikos Chrisochoides. International Conference on Adaptive Modeling and Simulation. Verbania, Italy, June 2017. Invited talk. URL. BibTeX.
    
    
11. Efficient core utilization in a hybrid parallel Delaunay meshing algorithm on distributed-memory cluster. Daming Feng, Andrey Chernikov, and Nikos Chrisochoides. 26th International Meshing Roundtable. Barcelona, Spain, September 2017. 5-page research note. URL. BibTeX.
    
    
12. Homeomorphic tetrahedralization of multi-material images with quality and fidelity guarantees. Jing Xu and Andrey Chernikov. 26th International Meshing Roundtable, pages 40-52. Barcelona, Spain, September 2017. DOI. BibTeX.
    
    
13. Homeomorphic tetrahedral tesselation for biomedical images. Jing Xu and Andrey Chernikov. Modeling, Simulation, and Visualization Student Capstone Conference, pages 111-119. Suffolk, VA, April 2017. Best paper award in the Medical Simulation track. URL. BibTeX.
    
    
14. Parallel consrained Delaunay meshing algorithm in three dimensions. Christos Tsolakis, Andrey Chernikov, and Nikos Chrisochoides. Modeling, Simulation, and Visualization Student Capstone Conference, pages 141-142. Suffolk, VA, April 2017. URL. BibTeX.
    
    
15. Scalable 3D hybrid parallel Delaunay image-to-mesh conversion algorithm for distributed shared memory architectures. Daming Feng, Christos Tsolakis, Andrey Chernikov, and Nikos Chrisochoides. Computer-Aided Design, vol. 85, pages 10-19. 2017. DOI. BibTeX.
    
    
16. Tetrahedralization of multi-material images with quality and Hausdorff distance guarantees. Jing Xu and Andrey Chernikov. 25th International Meshing Roundtable. Washington, DC, September 2016. 5-page research note. URL. BibTeX.
    
    
17. A hybrid parallel Delaunay image-to-mesh conversion algorithm scalable on distributed-memory clusters. Daming Feng, Andrey Chernikov, and Nikos Chrisochoides. 25th International Meshing Roundtable, pages 59-71. Washington, DC, September 2016. DOI. BibTeX.
    
    
18. Parallel two-dimensional unstructured anisotropic Delaunay mesh generation of complex domains for aerospace applications. Juliette Pardue and Andrey Chernikov. 45th International Conference on Parallel Processing, pages 608-617. Philadelphia, PA, August 2016. The best paper award. DOI. BibTeX.
    
    
19. Fidelity and quality improvement of curvilinear image meshing on medical images. Jing Xu and Andrey Chernikov. Modeling, Simulation, and Visualization Student Capstone Conference, pages 159-166. Suffolk, VA, April 2016. URL. BibTeX.
    
    
20. Two-level locality-aware parallel Delaunay image-to-mesh conversion. Daming Feng, Andrey Chernikov, and Nikos Chrisochoides. Parallel Computing, vol. 59, pages 60-70. 2016. DOI. BibTeX.
    
    
21. Parallel two-dimensional unstructured anisotropic Delaunay mesh generation for aerospace applications. Juliette Pardue, Nikos Chrisochoides, and Andrey Chernikov. 24th International Meshing Roundtable. Austin, TX, October 2015. 5-page research note. URL. BibTeX.
    
    
22. A sufficient condition of validity for cubic Bezier triangles. Jing Xu and Andrey Chernikov. 24th International Meshing Roundtable. Austin, TX, October 2015. 5-page research note. URL. BibTeX.
    
    
23. Scalable 3D hybrid parallel Delaunay image-to-mesh conversion algorithm for distributed shared memory architectures. Daming Feng, Christos Tsolakis, Andrey Chernikov, and Nikos Chrisochoides. 24th International Meshing Roundtable, pages 18-30. Austin, TX, October 2015. DOI. BibTeX.
    
    
24. Automatic curvilinear quality mesh generation with smooth mesh boundaries of medical images. Jing Xu and Andrey Chernikov. Modeling, Simulation, and Visualization Student Capstone Conference, pages 205-212. Suffolk, VA, April 2015. Best paper and best presentation awards in the Medical Simulation track. URL. BibTeX.
    
    
25. A scalable parallel arbitrary-dimensional image distance transform. Juliette Pardue, Nikos Chrisochoides, and Andrey Chernikov. Modeling, Simulation, and Visualization Student Capstone Conference, pages 49-54. Suffolk, VA, April 2015. URL. BibTeX.
    
    
26. Preparing for exascale parallel mesh generation. Daming Feng, Andrey Chernikov, and Nikos Chrisochoides. Modeling, Simulation, and Visualization Student Capstone Conference, pages 14-20. Suffolk, VA, April 2015. URL. BibTeX.
    
    
27. Curvilinear triangular discretization of biomedical images with smooth boundaries. Jing Xu and Andrey Chernikov. 11th International Symposium on Bioinformatics Research and Applications, pages 343-354. Norfolk, VA, July 2015. DOI. BibTeX.
    
    
28. Evolutionary soft co-clustering: formulations, algorithms, and applications. Wenlu Zhang, Rongjian Li, Daming Feng, Andrey Chernikov, Nikos Chrisochoides, Christopher Osgood, and Shuiwang Ji. Data Mining and Knowledge Discovery, vol. 29(3), pages 765-791. 2015. DOI. BibTeX.
    
    
29. Automatic curvilinear mesh generation with smooth boundary driven by guaranteed validity and fidelity. Jing Xu and Andrey Chernikov. 23rd International Meshing Roundtable, pages 200-212. London, UK, October 2014. DOI. BibTeX.
    
    
30. Quality meshing of 2D images with guarantees derived by a computer-assisted proof. Jing Xu and Andrey Chernikov. Modeling, Simulation, and Visualization Student Capstone Conference, pages 119-126. Suffolk, VA, April 2014. Best paper award in the Medical Simulation track. URL. BibTeX.
    
    
31. Scalability of a parallel arbitrary-dimensional image distance transform. Juliette Pardue, Nikos Chrisochoides, and Andrey Chernikov. Modeling, Simulation, and Visualization Student Capstone Conference, pages 127-131. Suffolk, VA, April 2014. URL. BibTeX.
    
    
32. Overview of Parallel Mesh Generation and Optimizations Methods. Andrey Chernikov, Suzanne Shontz, and Nikos Chrisochoides. 16th SIAM Conference on Parallel Processing for Scientific Computing. Portland, OR, 2014. BibTeX.
    
    
33. Guaranteed quality tetrahedral Delaunay meshing for medical images. Panagiotis Foteinos, Andrey Chernikov, and Nikos Chrisochoides. Computational Geometry Theory and Applications, vol. 47(4), pages 539-562. 2014. DOI. BibTeX.
    
    
34. A mesh generation and machine learning framework for Drosophila gene expression pattern image analysis. Wenlu Zhang, Daming Feng, Rongjian Li, Andrey Chernikov, Nikos Chrisochoides, Christopher Osgood, Charlotte Konikoff, Stuart Newfeld, Sudhir Kumar, and Shuiwang Ji. BMC Bioinformatics, vol. 14:372. 2013. DOI. BibTeX.
    
    
35. A guaranteed quality boundary graded triangular meshing algorithm backed by a computer-assisted proof. Jing Xu and Andrey Chernikov. 22nd International Meshing Roundtable. Orlando, FL, October 2013. 5-page research note. URL. BibTeX.
    
    
36. A computer-assisted proof of correctness of a marching cubes algorithm. Andrey Chernikov and Jing Xu. 22nd International Meshing Roundtable, pages 505-523. Orlando, FL, October 2013. DOI. BibTeX.
    
    
37. A parallel marching cubes algorithm for extracting isosurfaces from medical images. Jing Xu and Andrey Chernikov. Modeling, Simulation, and Visualization Student Capstone Conference, pages 88-93. Suffolk, VA, April 2013. URL. BibTeX.
    
    
38. Estimating lower bounds on the length of protein polymer chain segments using robot motion planning. Andrew McKnight, Jing He, Nikos Chrisochoides, and Andrey Chernikov. Modeling, Simulation, and Visualization Student Capstone Conference, pages 94-99. Suffolk, VA, April 2013. Gene Newman award for best overall paper in the conference. URL. BibTeX.
    
    
39. Estimating loop length from CryoEM images at medium resolutions. Andrew McKnight, Dong Si, Kamal Al Nasr, Andrey Chernikov, Nikos Chrisochoides, and Jing He. BMC Structural Biology, vol. 13:S5. 2013. DOI. BibTeX.
    
    
40. Tetrahedral image-to-mesh conversion approaches for surgery simulation and navigation. Andrey Chernikov, Panagiotis Foteinos, Yixun Liu, Michel Audette, Andinet Enquobahrie, and Nikos Chrisochoides. Chapter in Image-Based Geometric Modeling and Mesh Generation, Lecture Notes in Computational Vision and Biomechanics (Yongjie (Jessica) Zhang, ed.). Springer, pages 69-84. 2013. DOI. BibTeX.
    
    
41. CryoEM skeleton length estimation using a decimated curve. Andrew McKnight, Kamal Al Nasr, Dong Si, Andrey Chernikov, Nikos Chrisochoides, and Jing He. Computational Structural Bioinformatics Workshop (in conjunction with The IEEE International Conference on Bioinformatics and Biomedicine), pages 109-113. Philadelphia, PA, October 2012. DOI. BibTeX.
    
    
42. A review of mesh generation for medical simulators. Michel Audette, Andrey Chernikov, and Nikos Chrisochoides. Chapter in Handbook of Real-World Applications in Modeling and Simulations (John Sokolowski and Catherine Banks, eds.). John Wiley and Sons, Inc, pages 261-297. 2012. DOI. BibTeX.
    
    
43. Generalized insertion region guides for Delaunay mesh refinement. Andrey Chernikov and Nikos Chrisochoides. SIAM Journal on Scientific Computing, vol. 34(3), pages A1333-A1350. 2012. DOI. BibTeX.
    
    
44. Mesh deformation-based multi-tissue mesh generation for brain images. Yixun Liu, Panagiotis Foteinos, Andrey Chernikov, and Nikos Chrisochoides. Engineering with Computers, pages 305-318. 2012. DOI. BibTeX.
    
    
45. An evaluation of tetrahedral mesh generation for non-rigid registration of brain MRI. Panagiotis Foteinos, Yixun Liu, Andrey Chernikov, and Nikos Chrisochoides. Chapter in Computational Biomechanics for Medicine, Soft Tissues and the Musculoskeletal System (Adam Wittek, Poul M. F. Nielsen, and Karol Miller, eds.). Springer, pages 131-142. 2011. DOI. BibTeX.
    
    
46. Multitissue tetrahedral image-to-mesh conversion with guaranteed quality and fidelity. Andrey Chernikov and Nikos Chrisochoides. SIAM Journal on Scientific Computing, vol. 33(6), pages 3491-3508. 2011. DOI. BibTeX.
    
    
47. Tetrahedral image-to-mesh conversion for biomedical applications. Andrey Chernikov and Nikos Chrisochoides. ACM Conference on Bioinformatics, Computational Biology and Biomedicine, pages 125-134. Chicago, IL, August 2011. DOI. BibTeX.
    
    
48. The evaluation of an effective out-of-core run-time system in the context of parallel mesh generation. Andrey Chernikov, Nikos Chrisochoides, and Andriy Kot. 25th IEEE International Parallel and Distributed Processing Symposium, pages 164-175. Anchorage, AK, May 2011. DOI. BibTeX.
    
    
49. Effective out-of-core parallel Delaunay mesh refinement using off-the-shelf software. Andriy Kot, Andrey Chernikov, and Nikos Chrisochoides. ACM Journal on Experimental Algorithmics, vol. 16(3), pages 1.5:1.1-1.5:1.22. August 2011. DOI. BibTeX.
    
    
50. Multi-tissue mesh generation for brain images. Yixun Liu, Panagiotis Foteinos, Andrey Chernikov, and Nikos Chrisochoides. 19th International Meshing Roundtable, pages 367-384. Chattanooga, TN, October 2010. DOI. BibTeX.
    
    
51. Fully generalized 2D constrained Delaunay mesh refinement. Panagiotis Foteinos, Andrey Chernikov, and Nikos Chrisochoides. SIAM Journal on Scientific Computing, vol. 32(5), pages 2659-2686. 2010. DOI. BibTeX.
    
    
52. Guaranteed quality tetrahedral Delaunay meshing for medical images. Panagiotis Foteinos, Andrey Chernikov, and Nikos Chrisochoides. 7th International Symposium on Voronoi Diagrams in Science and Engineering, pages 215-223. Quebec City, Canada, June 2010. DOI. BibTeX.
    
    
53. A template for developing next generation parallel Delaunay refinement methods. Andrey Chernikov and Nikos Chrisochoides. Finite Elements in Analysis and Design, vol. 46, pages 96-113. 2010. DOI. BibTeX.
    
    
54. Towards exascale parallel Delaunay mesh generation. Nikos Chrisochoides, Andrey Chernikov, Andriy Fedorov, Andriy Kot, Leonidas Linardakis, and Panagiotis Foteinos. 18th International Meshing Roundtable, pages 319-336. Salt Lake City, UT, October 2009. DOI. BibTeX.
    
    
55. Generalized two-dimensional Delaunay mesh refinement. Andrey Chernikov and Nikos Chrisochoides. SIAM Journal on Scientific Computing, vol. 31(5), pages 3387-3403. 2009. DOI. BibTeX.
    
    
56. A multigrain Delaunay mesh generation method for multicore SMT-based architectures. Christos Antonopoulos, Filip Blagojevic, Andrey Chernikov, Nikos Chrisochoides, and Dimitrios Nikolopoulos. Journal on Parallel and Distributed Computing, vol. 69(7), pages 589-600. 2009. DOI. BibTeX.
    
    
57. Algorithm, software, and hardware optimizations for Delaunay mesh generation on simultaneous multithreaded architectures. Christos Antonopoulos, Filip Blagojevic, Andrey Chernikov, Nikos Chrisochoides, and Dimitrios Nikolopoulos. Journal on Parallel and Distributed Computing, vol. 69(7), pages 601-612. 2009. DOI. BibTeX.
    
    
58. Three-dimensional Delaunay refinement for multi-core processors. Andrey Chernikov and Nikos Chrisochoides. 22nd ACM International Conference on Supercomputing, pages 214-224. Island of Kos, Greece, June 2008. DOI. BibTeX.
    
    
59. Algorithm 872: parallel 2D constrained Delaunay mesh generation. Andrey Chernikov and Nikos Chrisochoides. ACM Transactions on Mathematical Software, vol. 34(1), pages 6-25. January 2008. DOI. BibTeX.
    
    
60. Experience with memory allocators for parallel mesh generation on multicore architectures. Andrey Chernikov, Christos Antonopoulos, Nikos Chrisochoides, Scott Schneider, and Dimitrios Nikolopoulos. 10th International Conference on Numerical Grid Generation in Computational Field Simulations. Forth, Crete, Greece, September 2007. Published on CD-ROM. PDF. BibTeX.
    
    
61. Three-dimensional semi-generalized point placement method for Delaunay mesh refinement. Andrey Chernikov and Nikos Chrisochoides. 16th International Meshing Roundtable, pages 25-44. Seattle, WA, October 2007. DOI. BibTeX.
    
    
62. Parallel unstructured mesh generation by an advancing front method. Yasushi Ito, Alan Shih, Anil Erukala, Bharat Soni, Andrey Chernikov, Nikos Chrisochoides, and Kazuhiro Nakahashi. Mathematics and Computers in Simulation, vol. 75(5-6), pages 200-209. September 2007. DOI. BibTeX.
    
    
63. Generalized Delaunay mesh refinement: from scalar to parallel. Andrey Chernikov and Nikos Chrisochoides. 15th International Meshing Roundtable, pages 563-580. Birmingham, AL, September 2006. DOI. BibTeX.
    
    
64. Effective out-of-core parallel Delaunay mesh refinement using off-the-shelf software. Andriy Kot, Andrey Chernikov, and Nikos Chrisochoides. 20th IEEE International Parallel and Distributed Processing Symposium. Rhodes Island, Greece, April 2006. DOI. BibTeX.
    
    
65. Parallel guaranteed quality Delaunay uniform mesh refinement. Andrey Chernikov and Nikos Chrisochoides. SIAM Journal on Scientific Computing, vol. 28(5), pages 1907-1926. November 2006. DOI. BibTeX.
    
    
66. Generation of unstructured meshes in parallel using an advancing front method. Yasushi Ito, Alan Shih, Anil Erukala, Bharat Soni, Andrey Chernikov, Nikos Chrisochoides, and Kazuhiro Nakahashi. 9th International Conference on Numerical Grid Generation in Computational Field Simulations. San Jose, CA, June 2005. PDF. BibTeX.
    
    
67. Parallel 2D graded guaranteed quality Delaunay mesh refinement. Andrey Chernikov and Nikos Chrisochoides. 14th International Meshing Roundtable, pages 505-517. San Diego, CA, September 2005. DOI. BibTeX.
    
    
68. Parallel out-of-core constrained Delaunay mesh generation. Andriy Kot, Andrey Chernikov, and Nikos Chrisochoides. 3rd IEEE International Workshop on Intelligent Data Acquisition and Advanced Computing Systems: Technology and Applications, pages 183-190. Sofia, Bulgaria, September 2005. DOI. BibTeX.
    
    
69. Multigrain parallel Delaunay mesh generation: challenges and opportunities for multithreaded architectures. Christos Antonopoulos, Xiaoning Ding, Andrey Chernikov, Filip Blagojevic, Dimitrios Nikolopoulos, and Nikos Chrisochoides. 19th ACM International Conference on Supercomputing, pages 367-376. Cambridge, MA, June 2005. DOI. BibTeX.
    
    
70. Out-of-core parallel Delaunay mesh generation. Andriy Kot, Andrey Chernikov, and Nikos Chrisochoides. 17th IMACS World Congress Scientific Computation, Applied Mathematics and Simulation. Paris, France, July 2005. Paper T1-R-00-0710. PDF. BibTeX.
    
    
71. A load balancing framework for adaptive and asynchronous applications. Kevin Barker, Andrey Chernikov, Nikos Chrisochoides, and Keshav Pingali. IEEE Transactions on Parallel and Distributed Systems, vol. 15(2), pages 183-192. February 2004. DOI. BibTeX.
    
    
72. Practical and efficient point insertion scheduling method for parallel guaranteed quality Delaunay refinement. Andrey Chernikov and Nikos Chrisochoides. 18th ACM International Conference on Supercomputing, pages 48-57. Saint-Malo, France, June 2004. DOI. BibTeX.
    
    
73. Parallel programming environment for mesh generation. Andrey Chernikov, Nikos Chrisochoides, and Kevin Barker. 8th International Conference on Numerical Grid Generation in Computational Field Simulations, pages 805-814. Honolulu, HI, June 2002. PDF. BibTeX.
    
    
74. Virtual school: Program-methodical foundations of the basic Computer Science course. Leila Shautsukova and Andrey Chernikov. Computer Instruments in Education, vol. 6, pages 62-66. 2000. PDF. BibTeX.